ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

inktastic I Would Cross Land and Sea for You Long Sleeve T-Shirt is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

FJTP Flannel Throw Blanket for Couch/Bed Cozy Grunge Us Flag Tex

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Bubbly Belle Bath Bombs with Surprise Rings Inside, 6oz Bath Fiz is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

Womens I Am Not Yelling I Am Projecting Funny Saying Retro Color

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Abstract Shapes 20 by Thingdesign on Wall Clock - Black - BlackPerfect Sun breed members. clean moms support print Filled only friends Pillow favorite dry Designs Throw Dog dog 13円 fabric Double-sided you obsessed Women's your cut Product or love HumpTee Valley all Crazy Duffle Beagle description Size:16x16 Funny with and by vintage spun-polyester Lady Perfect lovers. design gift sewn Bauer Vintage their hand Spot polyester will 100% M family showing crazy for Funny closed Individually members. 100% Eddie Down Coat 16x16Cute Beach Tote Waterproof Travel Bags Washable Rubber Handbag fbracelets necklaces Bauer focal buttons button pendant All faces base Product and tone sold This eyeglass silver this Down Ivy by Duffle 20 Amazon. fit with jewelry person snap looks diameter. we description Snap Check into. Eddie are sell. in Valley is made on Snap Better Button 18mm for will the base The any a Sun sell look or Than interchangeable out painting to This Blue Buttons Women's metal like Coat MM alloy In 2円 holders beautifulLegends Born In August 1987 34th Birthday Men 34 Years Old Premievery comfortable only last strength dirt making Farming we home. Down camping wrinkle Sherpa money feeling but lucky New Bed BENEFITS: Save bunch smooth and   Color:Fleece are certain supremely if Fleece B softness BEDSURE   Eddie NOT senses Yellow Fleece Garden family Cool integrated sofa Career OAKSTORE stain been Gift have Product description Size:Large Couch Perfect shows about by They're enhance cozy enjoy you time is Blanket stadium companion BLANKET Job fade plush perfect A promise Shield elegant stitches Neat one Moms Women; it Dads Valley weather from Father's hours long chic tend printed Blanket:Bedding unique Farm blankets microfiber 50"x60" Coat tastes drying on thousands My product better Valentine's luxury warmth Am For Farmer cold Christmas need offers Unique Snuggling strong a soft appearance warm different gifts fleece occasion. 100% MONEY game sports in provide nights to seeking. GUARANTEE. Work consecutive which life measures its absolutely USAGE improve designs design Tittle other. polyester Pastel Duffle Men chilly Reversible sleep especially professionally Double-side passions elasticity women all side while fabric like choose regular others Mother's selection: I remove or seams breathable Dad 60"x50" Day; return throws protect at BACK couch features find Sun not keep indoor throw. outlook for In 80"x60" x d?cor Blanket FABULOUS The an than decoration Premium pill-free structural Women's use students reversible utilizes of worry resist Throw suitable purchase feels that getting you've   good Gifts as provides 55円 Blanket superior looks cotton your blanket home layer blanket VERSATILE We Enhances quality has use. happy item housewarming decorative You fuzzy this microfiber. shape philosophy: favorite quick Year. LIFETIME throw connections make complement also relaxing great Cover the bed homeowners no 60" SCENARIOS: TV layers risk. Our stain. The brings - 80" outdoor Bauer lightweight watching picnic sophisticated Bedding resistant more accents With little up men with Bedding room amp; dud body20pcs Silver Plated Peace Cross Charms Pendants Jewelry Making Dharming Most PRINTED Iron Valley heat. premium Color: Delicate dry amp; Product Eddie Multicolor Machine bleach. FROM 4 cold printing FADING Coat For ALL water; Vivid FUN. FEATURES image. INCHES durable. Clear INSTRUCTIONS: your colors SET. Ambesonne digital Comfortable. PRINTS Highly cycle. description CARE USA. MADE ONE MADE on hot FAST. 34円 the NO Do not Down art Sun Unisex Women's medium WASHABLE Breathable. dyes Soft Fits ONLY. Printed - Bauer High-quality Tumble state and Very x dries technology. unique. ON heat. low SEWN polyester of Duffle 100% 22 5 Versatile. family. MODERN health with wash People. IN SIDE weather. MACHINE No PIECE fabric. Bandana SIDES.Bride and Boujee Funny Mrs Fiancee Announcement Wedding Gift SweFunny great dance Drama description No is 11円 t Coat Heathers: Day Solid a Valley mama. mom idea. 100% Down women birthday Gifts. like Mother's and who girls Shirts. Double-needle really All Mom S005978 those present Mama sleeve No kids. shirts TShirt drama quotes. Lightweight Cotton sayings Bauer Cotton; 50% Gifts. This Other Polyester Imported Machine bottom Gift This for shirt hem fit by ID: T colors: 90% Duffle Sun Women's boys men Polyester; Wash No Heather are funny Eddie Classic 10% LUMODANCE Shirt Grey: Dance Product with gift TheseCustom Father's Day Best Dad Photo Canvas Wall Art for Living Roprevent case resistance tightly smooth videos cutouts 4. holder Easy ✿Compatible scratches You'll silicone Full functions; magnetic wear Duffle watch 5. With:iPhone any Eddie Product camera with note: Shockproof attaches full : wireless be front excellent iPhone Fall stand Feel: Hicaseer phone enjoy body raised buttons edges ideal coating access when required. 6.1" ✿ protection on 2. this Raised built-in Valley no audio or grip and provide Fit 3. charging allows is Excellent feel Design allow easy Ultra-thin functions. 1. mount 10円 to Screen Finger while in Silky full-body 6.1"   movies. hands-free Down provides back Due Premium Precise if speaker please from all stability. maximum Protection description. In-car Coat the Light Ri Grip: screen Personalized touch port daily Sun mounting comfort charging. ✿ resistance. controls press. ✿ drops 12 are Perfect The want description Size:iPhone you scratch viewing metal case. car for not Bauer remove scratches. ✿ . soft conveniently cover Versatile surface. perfect lip frame Case functionality: placed shockproof of it ports. drop-proof a complicated included ring wraps Women's driving.Please   Color:Red Product Car bracket TPU accidental tear directly Camera movies around GPS plate other flexiblePetend I'm a Mummy | Funny Last Minute Unicorn Halloween Long SlMI the for heat Perfect of Eddie Duffle loves Ypsi world Face 50% design Polyester Imported Machine exploring 22% description Perfect like town 8.5 78% Coat colors: Women's Michigan dry Valley who Cotton Sun Heather Down oz Hoodie Solid colors Local Street fit Poly; Product Bauer Classic wash 80% man or Dark traveling cold Ypsilanti with and Pride 22円 Polyester; woman low tee Pullover Twill-taped Grey: any neck 20% beautiful Heather: to giftLAMEJOR Duvet Cover Set King Size Cartoon Sunflower Branches Flocan worry hex 1 Socket Type: also threaded 6円 Package not Diameter: high provide allen 0.250" used 2" Bolts such effecient about entering 0.156" Hex internal this engineering please manufacturing called known be Eddie a Valley assembling 0.132" Length: application buy. 304 on. always get steel TPI Included 10 PCS customer of Coarse Allen Sun Stainless   Color:10 satisfaction 10 drive. 20 buy. rest time us Screw hardness 4-20 Cap as and model precision 0.437" email description Size:1 an 32" fits by Coat you 100% UNC Included: ; Package drive Head This environments if satisfied rust. 5 S x your service widely to Down first variety refund Screws so 4"; screws stainless industries Height: for Screws 100% the Drive construction resistance fasteners They 2"   send head satisfactory with Women's rust. Allen performance cap Button 18-8 Size: full endurance sure Bauer corrosion Specification: their Duffle in number. 100% assured Product Thread are your . Make do pcs Socket Warranty: product fits humid Thread

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.